I recently lost a clustered Oracle RAC system and had to blow away GRID_HOME and RDMBS_HOME. This meant my cluster-aware install of the Enterprise Manager 13c agents was lost as well. So I simply removed AGENT_HOME. I then removed the OraInventory and proceeded to start from scratch. Once I had Grid Infrastructure up and running and my Oracle RAC databases operational, I had to back to Enterprise Manager and get everything right again. EM13c was reporting the agents were unreachable, which I knew. I now need to get this production system back into EM13c. The first part is to remove the agent and all of its targets. That is pretty simple in EM13c. I just went to Targets–>All Targets and selected one of the agents. In the Agent’s home screen, I clicked on Agent –> Target Setup –> Agent Decomission.
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Once all of the agents were removed from EM13c, I went to Targets –> All Targets to confirm I had no other targets missed by this process. I was then able to re-add the agents the usual way.